That wrapped up a 4-0 aggregate win and Bayern were rarely in danger of letting their lead slip.
Mario Mandzukic headed home in the second half and Claudio Pizarro netted another in the dying seconds.
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Who of Europe’s top strikers will move to England this summer?
After a dreadful start to their Bundesliga campaign, Borussia Dortmund appear to have weathered the storm after going five matches without defeat.